Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015850669.1_cds_XP_016511248.1_24010
CDS Infomation

[gene=LOC107828455] [db_xref=GeneID:107828455] [protein=lysine-specific demethylase JMJ18-like] [partial=3'] [protein_id=XP_016511248.1] [location=complement(join(<6..41,390..758,1171..1332,1459..1683,1782..2294,2379..2456,3168..3239,4360..4398))] [gbkey=CDS]
Sequence

ATGTGCTCCAGGGCGCAATCTGAAAAAAAGAGCATGAAGGAACATCCTTCTAGACAGGCT
CCAAAAGGTGAAAATAATATTGAGAGTTCAGGCAGCCCTCGTAGTCGGAAGGTGTCAGCA
AGATGGAATCCTGGCGAAGCTTGTAGGCCCATCTTACAGGATGCTCCTGTGTACTATCCA
AATGATGAGGAGTTCAAAGATCCACTTGGTTATATTGCAAGCATTCGCCCCTACGCACAG
CCATATGGCATATGCAGGATTGTACCACCTGCATCTTGGAGTCCACCCTGCCCACTTAGA
GAGAAGAATGTGTGGGAATTTGCTAAGTTCTCGACTCGAATCCAGCAAGTTGATTTACTT
CAGAATAGGGAGCCCATGAAAAAGAAAAAACAGAGAAAGAGGAAAAGACGATGGTACTCA
AAGATGGGATCAACGAGGAGACAACCAAGAGCTCTAGGTTCTGAATCAAATACTCAATCG
AACAATAGTGATGAGAAGTTCGGGTTTCAGTCAGGGTCTGACTTCACATTTGAGGAATTT
GAGACGTTTTCCAAAGATTTTAAAGAGTTCTATTTTGGGATGACGGATCCTGAAGATGGA
GCCTGTGATGAACCTAAACAGGACAAGGTATGGCAACCGTCCATTGAAGAAATTGAAGGT
GAGTATTGGCGCATCATTGAGAAGCCAACAGATGAAGTTGAGGTGTACTATGGAGCTGAT
CTGGAAACTGGAGTATTCGGCAGTGGATTCCCCCAAGAATCTTTATCTCCAAATGCTCGT
ACTTTAAATCAGTATGCGACTTCTGGTTGGAACTTGAACAACTTACCGCGCCTGCCATGT
TCTGTATTGTGCTTTGAGGAGTGCAATATCTCAGGAGTTTTGATCCCGTGGCTGTATATT
GGAATGTGCTTCTCATCATTCTGTTGGCACGTTGAGGACCACCATCTTTATTCTCTGAAT
TATATGCATTGGGGTGAGCCAAAGATTTGGTATGGAGTGCCAGGAACTCATGCTTCAGCC
CTGGAGGATGCAATGAGAAAGCATTTGCCAGATCTGTTTGAAGAGCAACCTGATTTGCTT
CACGAACTTGTAACTCAGTTGTCTCCTTCAGTTTTGAAGTCAGAGGGTGTACCAGTGTAC
CGTGCTGTTCAGAACCCAGGGGAGTTTGTGCTCACATTCCCAAGAGCCTATCATTCTGGA
TTTAACTGTGGGTTCAACTGCGCGGAGGCCGTTAATCTGGCCCCTGTTGATTGGTTAGAG
CATGGACTAACTGCAGTGGAGCTCTACAGCAAGCAACGTCGTAAAACTTCACTTTCACAT
GATAAGTTGCTTATAGGAGCAGCTAGTGAAGCTATCGAGGCATTGTGGGAGCTCTCTGCT
CTTAAGAATCTAAACAGTAGAAACGTGAGATGGAAAAGTTTCTGTGGGAAGGATGGTATG
CTGACTAAAGCTATTAAGAGAAGAATTGAGATGGAGAAGGAAAGACTGGAGCGA

Peptide Sequence

PEP ID

XP_016511248.1
PEP Infomation

PREDICTED: lysine-specific demethylase JMJ18-like, partial [Nicotiana tabacum]
Sequence

MCSRAQSEKKSMKEHPSRQAPKGENNIESSGSPRSRKVSARWNPGEACRPILQDAPVYYP
NDEEFKDPLGYIASIRPYAQPYGICRIVPPASWSPPCPLREKNVWEFAKFSTRIQQVDLL
QNREPMKKKKQRKRKRRWYSKMGSTRRQPRALGSESNTQSNNSDEKFGFQSGSDFTFEEF
ETFSKDFKEFYFGMTDPEDGACDEPKQDKVWQPSIEEIEGEYWRIIEKPTDEVEVYYGAD
LETGVFGSGFPQESLSPNARTLNQYATSGWNLNNLPRLPCSVLCFEECNISGVLIPWLYI
GMCFSSFCWHVEDHHLYSLNYMHWGEPKIWYGVPGTHASALEDAMRKHLPDLFEEQPDLL
HELVTQLSPSVLKSEGVPVYRAVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNLAPVDWLE
HGLTAVELYSKQRRKTSLSHDKLLIGAASEAIEALWELSALKNLNSRNVRWKSFCGKDGM
LTKAIKRRIEMEKERLER

Transcript Sequence

Gene sequence data has not been registered.